OverviewΒΆ

The plant handler component can be called by running src/__main__ as a module. There are two modes of interaction: command line mode and interactive mode. These are both explained in more detail in their respective how to use pages: Plant Handler in Command Line Mode and Plant Handler in Interactive Mode. The following actions are possible using the plant handler package:

  1. Extract images

  2. Extract tiles

  3. Plot embolism profile

  4. Plot embolism count barplot

  5. EDA DataFrame

  6. DataBunch DataFrame

  7. Prediction (TF2 Model)

  8. Trim sequence

  9. Create Dataset

  10. Augment Dataset

The tensorflow model component can be called by running src/pipelines/tensorflow_v2/__main__ as a module. This can either be run in interactive mode or by supplying a json file with the necessary instructions. There is no command line mode in this case as there are many input parameters. This is expanded on in this how to page: TF2 Model Builder. The following actions are possible with the TF2 model builder package:

  1. Tuning

  2. Training